com.archimed.dicom.image

Class DicomImage

java.lang.Object

com.archimed.dicom.GroupList

com.archimed.dicom.DicomObject

com.archimed.dicom.image.DicomImage

All Implemented Interfaces:

java.io.Serializable

Direct Known Subclasses:

SCImage

public class DicomImage
extends DicomObject

This class provides methods to construct a Dicom image, only the modules which are common to all DICOM image modalities, can be manipulated with this class.

Note: only required (type 1 and 2) attributes are mentioned, the rest can be set using the different sets provided in DicomObject.

Since:

18/02/1999

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected JdtLogger	log

Constructor Summary

Constructors

Constructor and Description
DicomImage()

Method Summary

Methods

Modifier and Type	Method and Description
void	generalEquipmentData(java.lang.String manufacturer) Method to insert the General Equipment Module data into this DicomImage.
void	generalImageData(java.lang.String imageNumber) Method to insert the General Image Module data into this DicomImage.
void	generalSeriesData(java.lang.String modality, java.lang.String instanceUID, java.lang.String seriesNumber) Method to insert the General Series Module data into this DicomImage.
void	generalStudyData(java.lang.String instanceUID, java.lang.String date, java.lang.String time, java.lang.String physName, java.lang.String studyID, java.lang.String orderNumber) Method to insert the General Study Module data into this DicomImage.
void	imagePixelData(int rows, int cols, byte[] pixelData, byte[] red, byte[] green, byte[] blue) Method to insert the Image Pixel Module data into this DicomImage.
void	imagePixelData(int rows, int cols, int planarConf, byte[] pixelData) Inserts the Image Pixel Module data into the DICOM data set.
void	imagePixelData(int rows, int cols, int planarConf, int[] pixelData) basically does the same as imagePixelData(rows, cols, pc, pixels) but takes an int[] as argument for pixeldata.
void	imagePixelData(int rows, int cols, int bitsAlloc, int bitsStored, int highBit, byte[] pixelData) Method to insert the Image Pixel Module data into this DicomImage.
void	imagePixelData(int rows, int cols, int bitsAlloc, int bitsStored, int highBit, int[] pixelData) inserts the Image Pixel Module data into this DicomImage.
void	patientData(java.lang.String patientName, java.lang.String patientID, java.lang.String birthDate, java.lang.String sex) Method to insert the Patient Module data into this DicomImage.
void	sopCommonData(java.lang.String sopClassUID, java.lang.String sopInstanceUID) The method is used to set SOP Common Module Data

Methods inherited from class com.archimed.dicom.DicomObject

addATValue_ge, addATValue, addBigDecimal_ge, addBigDecimal_ge, addBigDecimal, addBulkDataReference_ge, addBulkDataReference_ge, addBulkDataReference, addByteArray_ge, addByteArray_ge, addByteArray, addBytes_ge, addBytes_ge, addBytes, addDouble_ge, addDouble_ge, addDouble, addDoubles_ge, addDoubles_ge, addDoubles, addFloat_ge, addFloat_ge, addFloat, addFloats_ge, addFloats_ge, addFloats, addInteger_ge, addInteger_ge, addInteger, addLong_ge, addLong_ge, addLong, addPersonName_ge, addPersonName_ge, addPersonName_ge, addPersonName_ge, addPersonName, addPersonName, addSequenceItem_ge, addSequenceItem_ge, addSequenceItem, addShort_ge, addShort_ge, addShort, addString_ge, addString_ge, addString, append_ge, append_ge, append, calculateOffset, deleteItem_ge, deleteItem_ge, deleteItem_ge, deleteItem_ge, deleteItem, deleteItem, dicomCharsets, dumpVRs, dumpVRs, dumpVRs, get_ge, get_ge, get_ge, get_ge, get, get, getATValue_ge, getATValue, getBigDecimal_ge, getBigDecimal_ge, getBigDecimal, getBulkDataReference_ge, getBulkDataReference_ge, getBulkDataReference, getByteArray_ge, getByteArray_ge, getByteArray, getBytes_ge, getBytes_ge, getBytes, getDataElement, getDataElement, getDataElement, getDouble_ge, getDouble_ge, getDouble, getDoubles_ge, getDoubles_ge, getDoubles, getFileMetaInformation, getFloat_ge, getFloat_ge, getFloat, getFloats_ge, getFloats_ge, getFloats, getI_ge, getI_ge, getI, getI, getInteger_ge, getInteger_ge, getInteger, getLong_ge, getLong_ge, getLong, getOffset, getParent, getPersonName_ge, getPersonName_ge, getPersonName, getPreamble, getS_ge, getS_ge, getS, getS, getSeqItemLenState, getSeqLenState_ge, getSeqLenState_ge, getSeqLenState, getSequenceItem_ge, getSequenceItem_ge, getSequenceItem, getShort_ge, getShort_ge, getShort, getSize_ge, getSize_ge, getSize, getString_ge, getString_ge, getString_ge, getString_ge, getString, getString, getType_ge, getType_ge, getType, newDataElement_ge, newDataElement_ge, newDataElement, read, read, read, remove_ge, remove_ge, remove, set_ge, set_ge, set_ge, set_ge, set, set, setATValue_ge, setATValue, setBigDecimal_ge, setBigDecimal_ge, setBigDecimal, setBulkDataReference_ge, setBulkDataReference_ge, setBulkDataReference, setByteArray_ge, setByteArray_ge, setByteArray, setBytes_ge, setBytes_ge, setBytes, setDouble_ge, setDouble_ge, setDouble, setDoubles_ge, setDoubles_ge, setDoubles, setFileMetaInformation, setFloat_ge, setFloat_ge, setFloat, setFloats_ge, setFloats_ge, setFloats, setInteger_ge, setInteger_ge, setInteger, setLong_ge, setLong_ge, setLong, setPersonName_ge, setPersonName_ge, setPersonName_ge, setPersonName_ge, setPersonName, setPersonName, setPreamble, setSeqItemLenState, setSeqLenState_ge, setSeqLenState_ge, setSeqLenState, setSequenceItem_ge, setSequenceItem_ge, setSequenceItem, setShort_ge, setShort_ge, setShort, setString_ge, setString_ge, setString, setType_ge, setType_ge, setType, write, write, write

Methods inherited from class com.archimed.dicom.GroupList

addGroups, clear, containsGroup, copyGroup, enumerateVRs, enumerateVRs, isEmpty, numberOfElements, numberOfGroups, removeGroup

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected JdtLogger log

Constructor Detail

DicomImage

public DicomImage()

Method Detail

patientData

public void patientData(java.lang.String patientName,
               java.lang.String patientID,
               java.lang.String birthDate,
               java.lang.String sex)
                 throws DicomException

Method to insert the Patient Module data into this DicomImage.

Parameters:

patientID - Primary hospital identification number or code for the patient

sex - Patient's sex. Allowed values: M (male), F (female), O (other)

Throws:

DicomException - is thrown when one of the given parameters has an invalid format.

generalStudyData

public void generalStudyData(java.lang.String instanceUID,
                    java.lang.String date,
                    java.lang.String time,
                    java.lang.String physName,
                    java.lang.String studyID,
                    java.lang.String orderNumber)
                      throws DicomException

Method to insert the General Study Module data into this DicomImage.

Parameters:

instanceUID - Unique identifier for the study

date - Date the study started

time - Time the study started

physName - Patient's referring Physician

studyID - User or equipment generated Study identifier

orderNumber - A RIS generated number which identifies the order for the Study

Throws:

DicomException - is thrown when one of the given parameters has an invalid format.

generalSeriesData

public void generalSeriesData(java.lang.String modality,
                     java.lang.String instanceUID,
                     java.lang.String seriesNumber)
                       throws DicomException

Method to insert the General Series Module data into this DicomImage.

Parameters:

modality - Type of equipment that originally acquired the data used to create the images in this Series. Two letter abbreviation e.g.: NM (nuclear medicine)

instanceUID - Unique identifier of the Series

seriesNumber - A number that identifies this Series

Throws:

DicomException - is thrown when one of the given parameters has an invalid format.

generalEquipmentData

public void generalEquipmentData(java.lang.String manufacturer)

Method to insert the General Equipment Module data into this DicomImage.

Parameters:

manufacturer - Manufacturer of the equipment that produced the image.

generalImageData

public void generalImageData(java.lang.String imageNumber)
                      throws DicomException

Method to insert the General Image Module data into this DicomImage.

Parameters:

imageNumber - A number that identifies this Image

Throws:

DicomException - is thrown when imageNumber does not represent an integer

imagePixelData

public void imagePixelData(int rows,
                  int cols,
                  int bitsAlloc,
                  int bitsStored,
                  int highBit,
                  byte[] pixelData)
                    throws DicomException

Method to insert the Image Pixel Module data into this DicomImage.
This method is intended for use with monochrome images

Parameters:

bitsAlloc - Number of bits allocated for each pixel sample. Only 8, 16, 24 and 32 bits are allowed

bitsStored - Number of bits stored for each pixel sample

highBit - Most significant bit for pixel sample data

pixelData - A byte array of the pixel data. All pixels have to be stored as unsigned integers (little endian encoding)

rows - height

cols - width

Throws:

DicomException - is thrown if one/some of the parameters are inconsistent

imagePixelData

public void imagePixelData(int rows,
                  int cols,
                  int bitsAlloc,
                  int bitsStored,
                  int highBit,
                  int[] pixelData)
                    throws DicomException

inserts the Image Pixel Module data into this DicomImage. Essentialy does the same as imagePixelData(int, int, int, int, int, byte[]) but takes an int[] as parameter for pixeldata.

Parameters:

rows - height

cols - width

Throws:

DicomException

imagePixelData

public void imagePixelData(int rows,
                  int cols,
                  int planarConf,
                  byte[] pixelData)
                    throws DicomException

Inserts the Image Pixel Module data into the DICOM data set.
This method is intended for use with RGB images.

Parameters:

rows - height

cols - width

planarConf - Planar Configuration, indicates in what order the R,G and B bytes are:

• 0: R1,G1,B1,R2,G2,B2,....,Rn,Gn,Bn
• 1: R1,R2,...,Rn,G1,G2,...,Gn,B1,B2,...,Bn

Throws:

DicomException

imagePixelData

public void imagePixelData(int rows,
                  int cols,
                  int planarConf,
                  int[] pixelData)
                    throws DicomException

basically does the same as imagePixelData(rows, cols, pc, pixels) but takes an int[] as argument for pixeldata.

Parameters:

rows - height

cols - width

planarConf -

pixelData -

Throws:

DicomException

imagePixelData

public void imagePixelData(int rows,
                  int cols,
                  byte[] pixelData,
                  byte[] red,
                  byte[] green,
                  byte[] blue)
                    throws DicomException

Method to insert the Image Pixel Module data into this DicomImage.
This method is intended for use with palette color images. It pads the LUTs to length 256, because otherwise most DICOM-viewers can't display the image properly. For Palette Color images of depth > 8, you'll have to use specific set methods.

Parameters:

pixelData - A byte array of the pixel data.

red - Red palette color LUT data

green - Green palette color LUT data

blue - Blue palette color LUT data

rows - height

cols - width

Throws:

DicomException - is thrown if one/some of the parameters are inconsistent

sopCommonData

public void sopCommonData(java.lang.String sopClassUID,
                 java.lang.String sopInstanceUID)

The method is used to set SOP Common Module Data

Parameters:

sopClassUID - Uniquely identifies the SOP Class if 'null' is given, the method uses 1.2.840.10008.5.1.4.1.1.7 which is the UID for Secondary Capture Image Storage.

sopInstanceUID - Uniquely identifies the SOP Instance.